Cohen Lab

University of Washington

OTHER HEALTH PROFESSIONS

Seattle · United States

NIH-funded
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NIH R01 · 2024

DeconDTN: Deconfounding Deep Transformer Networks for Clinical NLP

Natural Language Processing (NLP) methods have been broadly applied to clinical problems, from recognition of clinical findings in physician notes to identification of transcribed speech samples indicating changes in cognitive status. Deep transformer networks (DTNs) have dramatically advanced NLP accuracy. These deep learning models have multiple hidden layers that may correspond to billions of trainable parameters, allowing them to apply information learned from training on large unlabeled corpora to a specific task of interest. However, their size leaves them especially vulnerable to confounding bias, induced by variables that can influence both the predictor (text) and the outcome (e.g.…

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