Chong Lab

University of Pittsburgh at Pittsburgh

ANATOMY/CELL BIOLOGY

Pittsburgh · United States

NIH-funded
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NIH R01 · 2025

WESTPA: A high-performance framework for simulating at the frontiers of biology

WESTPA: A high-performance framework for simulating at the frontiers of biology (Renewal) There is a ‘silicon ceiling’ that ultimately limits many, if not most, types of dynamical biological simulations. That is, even the world’s most powerful computers cannot generate sufficiently long simulations, whether for atomistic models of proteins or for realistic models of cell behavior. In many cases, the key events may occur beyond simulation timescales – such as large conformational transitions in proteins, drug membrane permeation, or transitions of cell behavior from healthy to pathological states. The WESTPA software package is a powerful ‘meta tool’—software that controls other…

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