Berger Lab

University of California Santa Cruz

ENGINEERING (ALL TYPES)

Santa Cruz · United States

NIH-funded
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NIH R01 · 2025

Computational and functional discovery of isoforms driving cancer and drug resistance

ABSTRACT A major challenge for the cancer genomics community is determining which somatic mutations are contributing to tumorigenesis, which are “passenger” (neutral) mutations, and which mutations will inform personalized treatment decisions. Unfortunately, most functional studies of cancer mutations have largely ignored the impact of altered RNA processing even though this alteration is widespread in cancer, and is a mechanism of both oncogenesis and therapeutic resistance. We hypothesize that we are missing critical information about cancer gene alterations when not considering isoform-specific functions and this is likely to affect cancer treatment. Given the breadth in the lack of…

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