Medema Lab

Wageningen University

Oost-Nederland (NL2) · Netherlands

ERC-funded
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ERC Starting Grant · 2020

A computational framework to interpret the chemical language of the microbiome

Humans, animals and plants are covered in microbes. Such microbiomes have a major impact on the health of their hosts and have been linked to traits like growth promotion, stress resilience, and diseases. However, the mechanisms underlying microbiome-host interactions remain poorly understood. Recent studies have shown that microbiome-associated phenotypes are often mediated by specific molecules, a ‘chemical language’ that enables microbes to interact with each other and with the host. The biosynthesis of these molecules is encoded in metabolic gene clusters (MGCs) that are subject to frequent horizontal transfer and are therefore highly strain-specific. Current computational methods for…

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