Boecker Lab

University of Jena

Thüringen (DEG) · Germany

ERC-funded
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ERC Advanced Grant · 2024

Repository-wide screening for bioactivity and protein binding using small molecule mass spectrometry data

Bioactivity and ligand binding remain central topics for understanding protein function, for drug discovery and toxicology. Mass spectrometry (MS) allows to detect thousands of small molecules in a biological sample with a single experimental run. Compound annotation is carried out using tandem MS. I will develop machine learning models that predict whether a query small molecule has a certain bioactivity or is binding to a certain protein, where the only information we have about the query molecule is its tandem mass spectra. The identity and molecular structure of the query small molecule is unknown; it is unknown to the models, to me, and potentially even to mankind. Clearly, bioactivity…

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